| Effects of selected root exudate components on soil bacterial communities S Shi, AE Richardson, M O'Callaghan, KM DeAngelis, EE Jones, ... FEMS microbiology ecology 77 (3), 600-610, 2011 | 217 | 2011 |
| The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages S Shi, EE Nuccio, ZJ Shi, Z He, J Zhou, MK Firestone Ecology letters 19 (8), 926-936, 2016 | 148 | 2016 |
| Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly K Zhalnina, KB Louie, Z Hao, N Mansoori, UN da Rocha, S Shi, H Cho, ... Nature microbiology 3 (4), 470, 2018 | 141 | 2018 |
| Successional trajectories of rhizosphere bacterial communities over consecutive seasons S Shi, E Nuccio, DJ Herman, R Rijkers, K Estera, J Li, UN da Rocha, Z He, ... MBio 6 (4), e00746-15, 2015 | 67 | 2015 |
| In situ sampling of low molecular weight organic anions from rhizosphere of radiata pine (Pinus radiata) grown in a rhizotron system S Shi, L Condron, S Larsen, AE Richardson, E Jones, J Jiao, ... Environmental and Experimental Botany 70 (2-3), 131-142, 2011 | 37 | 2011 |
| Changes to the structure of Sphingomonas spp. communities associated with biodegradation of the herbicide isoproturon in soil S Shi, GD Bending FEMS microbiology letters 269 (1), 110-116, 2007 | 35 | 2007 |
| Biodegradation of the herbicide mecoprop-p with soil depth and its relationship with class III tfdA genes MS Rodríguez-Cruz, J Bælum, LJ Shaw, SR Sørensen, S Shi, T Aspray, ... Soil Biology and Biochemistry 42 (1), 32-39, 2010 | 25 | 2010 |
| Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem J Xiong, Z He, S Shi, A Kent, Y Deng, L Wu, JD Van Nostrand, J Zhou Scientific reports 5, 9316, 2015 | 24 | 2015 |
| Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon EP Starr, S Shi, SJ Blazewicz, AJ Probst, DJ Herman, MK Firestone, ... Microbiome 6 (1), 122, 2018 | 23 | 2018 |
| Investigation of organic anions in tree root exudates and rhizosphere microbial communities using in situ and destructive sampling techniques S Shi, M O’Callaghan, EE Jones, AE Richardson, C Walter, A Stewart, ... Plant and soil 359 (1-2), 149-163, 2012 | 21 | 2012 |
| Challenges in assessing links between root exudates and the structure and function of soil microbial communities S Shi, AE Richardson, M O'Callaghan, M Firestone, L Condron Molecular Microbial Ecology of the Rhizosphere 1, 125-135, 2013 | 12 | 2013 |
| Successional trajectories of rhizosphere bacterial communities over consecutive seasons. mBio 6: e00746-15 S Shi, E Nuccio, DJ Herman, R Rijkers, K Estera, J Li, UN da Rocha, Z He, ... PubMed PubMedCentral, 2015 | 9 | 2015 |
| Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol 3: 470–480 K Zhalnina, KB Louie, Z Hao, N Mansoori, UN da Rocha, S Shi, H Cho, ... | 7 | 2018 |
| Plant roots alter microbial functional genes supporting root litter decomposition S Shi, DJ Herman, Z He, J Pett-Ridge, L Wu, J Zhou, MK Firestone Soil Biology and Biochemistry 127, 90-99, 2018 | 6 | 2018 |
| Exploring Potential Interactions of Bacteria and Fungi Using Network and DNA-Stable Isotope Probing Analyses of an Annual Grassland Soil M Yuan, A Kakouridis, E Starr, S Shi, EE Nuccio, J Pett-Ridge, J Zhou, ... AGU Fall Meeting 2019, 2019 | | 2019 |
| Applying Quantitative Stable Isotope Probing to Metagenomic Sequencing of Rhizosphere-Associated Microbes B Koch, E Starr, S Shi, JF Banfield, S Blazewicz, P Dijkstra, M Firestone, ... AGU Fall Meeting 2019, 2019 | | 2019 |
| Increasing biological nitrogen fixation by white clover-rhizobia symbiosis S Shi, L Villamizar, E Gerard, C Ronson, S Wakelin, R Ballard, ... Journal of New Zealand Grasslands 81, 231-234, 2019 | | 2019 |
| Plant roots alter microbial potential for mediation of soil organic carbon decomposition M Firestone, S Shi, D Herman, Z He, J Zhou AGU Fall Meeting Abstracts, 2014 | | 2014 |
| Ecosystems Biology Approaches To Determine Key Fitness Traits of Soil Microorganisms E Brodie, K Zhalnina, U Karaoz, H Cho, EE Nuccio, S Shi, MS Lipton, ... AGU Fall Meeting Abstracts, 2014 | | 2014 |
| Impacts of elevated CO2 on plant-microbial interactions S Shi, D Herman, EE Nuccio, J Pett-Ridge, E Brodie, Z He, J Zhou, ... AGU Fall Meeting Abstracts, 2014 | | 2014 |