Ana Abecasis
Ana Abecasis
Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa
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Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools
AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ...
Infection, genetics and evolution 19, 337-348, 2013
HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics
AB Abecasis, AMJ Wensing, D Paraskevis, J Vercauteren, K Theys, ...
Retrovirology 10, 1-13, 2013
A genomic signature and the identification of new sporulation genes
AB Abecasis, M Serrano, R Alves, L Quintais, JB Pereira-Leal, ...
Journal of bacteriology 195 (9), 2101-2115, 2013
Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution
AB Abecasis, AM Vandamme, P Lemey
Journal of virology 83 (24), 12917-12924, 2009
Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form
AB Abecasis, P Lemey, N Vidal, T de Oliveira, M Peeters, R Camacho, ...
Journal of virology 81 (16), 8543-8551, 2007
Phylogeography of dengue virus serotype 4, Brazil, 2010–2011
MRT Nunes, NR Faria, HB Vasconcelos, DB de Almeida Medeiros, ...
Emerging infectious diseases 18 (11), 1858, 2012
Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G
AB Abecasis, K Deforche, J Snoeck, LT Bacheler, P McKenna, ...
Aids 19 (16), 1799-1806, 2005
Investigation of baseline susceptibility to protease inhibitors in HIV-1 subtypes C, F, G and CRF02_AG
AB Abecasis, K Deforche, LT Bacheler, P McKenna, AP Carvalho, ...
Antiviral therapy 11 (5), 581-589, 2006
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ...
Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020
HIV and tuberculosis co-infection among migrants in Europe: A systematic review on the prevalence, incidence and mortality
AM Tavares, I Fronteira, I Couto, D Machado, M Viveiros, AB Abecasis, ...
PloS one 12 (9), e0185526, 2017
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
V Fonseca, PJK Libin, K Theys, NR Faria, MRT Nunes, MI Restovic, ...
PLoS neglected tropical diseases 13 (5), e0007231, 2019
Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon
NR Faria, MA Suchard, A Abecasis, JD Sousa, N Ndembi, I Bonfim, ...
Infection, Genetics and Evolution 12 (2), 453-460, 2012
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
PJK Libin, K Deforche, AB Abecasis, K Theys
Bioinformatics 35 (10), 1763-1765, 2019
Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe
D Frentz, DAMC Van de Vijver, AB Abecasis, J Albert, O Hamouda, ...
BMC Infectious Diseases 14, 1-12, 2014
The impact of HIV-1 within-host evolution on transmission dynamics
K Theys, P Libin, AC Pineda-Pena, A Nowe, AM Vandamme, AB Abecasis
Current opinion in virology 28, 92-101, 2018
Patterns of transmitted HIV drug resistance in Europe vary by risk group
D Frentz, D van de Vijver, A Abecasis, J Albert, O Hamouda, L Jørgensen, ...
PloS one 9 (4), e94495, 2014
Limited cross-border infections in patients newly diagnosed with HIV in Europe
D Frentz, AMJ Wensing, J Albert, D Paraskevis, AB Abecasis, O Hamouda, ...
Retrovirology 10, 1-10, 2013
HIV-1 subtype is an independent predictor of reverse transcriptase mutation K65R in HIV-1 patients treated with combination antiretroviral therapy including tenofovir
K Theys, J Vercauteren, J Snoeck, M Zazzi, RJ Camacho, C Torti, ...
Antimicrobial agents and chemotherapy 57 (2), 1053-1056, 2013
Phylogenetic analysis as a forensic tool in HIV transmission investigations
AB Abecasis, M Pingarilho, AM Vandamme
Aids 32 (5), 543-554, 2018
Science in court: the myth of HIV fingerprinting
AB Abecasis, AM Geretti, J Albert, L Power, M Weait, AM Vandamme
The Lancet infectious diseases 11 (2), 78-79, 2011
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