David L. Tabb
David L. Tabb
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Cited by
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
B MacLean, DM Tomazela, N Shulman, M Chambers, GL Finney, ...
Bioinformatics 26 (7), 966-968, 2010
A cross-platform toolkit for mass spectrometry and proteomics
MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ...
Nature biotechnology 30 (10), 918-920, 2012
A proteomic view of the Plasmodium falciparum life cycle
L Florens, MP Washburn, JD Raine, RM Anthony, M Grainger, JD Haynes, ...
Nature 419 (6906), 520-526, 2002
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
DL Tabb, WH McDonald, JR Yates
Journal of proteome research 1 (1), 21-26, 2002
Proteogenomic characterization of human colon and rectal cancer
B Zhang, J Wang, X Wang, J Zhu, Q Liu, Z Shi, MC Chambers, ...
Nature 513 (7518), 382-387, 2014
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma
TA Addona, SE Abbatiello, B Schilling, SJ Skates, DR Mani, DM Bunk, ...
Nature biotechnology 27 (7), 633-641, 2009
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
DL Tabb, CG Fernando, MC Chambers
Journal of proteome research 6 (2), 654-661, 2007
Repeatability and reproducibility in proteomic identifications by liquid chromatography− tandem mass spectrometry
DL Tabb, L Vega-Montoto, PA Rudnick, AM Variyath, AJL Ham, DM Bunk, ...
Journal of proteome research 9 (2), 761-776, 2010
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
Proteomic parsimony through bipartite graph analysis improves accuracy and transparency
B Zhang, MC Chambers, DL Tabb
Journal of proteome research 6 (9), 3549-3557, 2007
GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model
DL Tabb, A Saraf, JR Yates
Analytical chemistry 75 (23), 6415-6421, 2003
MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications
WH McDonald, DL Tabb, RG Sadygov, MJ MacCoss, J Venable, ...
Rapid Communications in Mass Spectrometry 18 (18), 2162-2168, 2004
IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering
ZQ Ma, S Dasari, MC Chambers, MD Litton, SM Sobecki, LJ Zimmerman, ...
Journal of proteome research 8 (8), 3872-3881, 2009
Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra
LA Breci, DL Tabb, JR Yates, VH Wysocki
Analytical chemistry 75 (9), 1963-1971, 2003
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456. e31, 2020
Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides
DL Tabb, LL Smith, LA Breci, VH Wysocki, D Lin, JR Yates
Analytical chemistry 75 (5), 1155-1163, 2003
Large-scale protein identification using mass spectrometry
D Lin, DL Tabb, JR Yates III
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1646 (1-2), 1-10, 2003
Employing ProteoWizard to convert raw mass spectrometry data
JD Holman, DL Tabb, P Mallick
Current protocols in bioinformatics 46 (1), 13.24. 1-13.24. 9, 2014
The enterocyte microvillus is a vesicle-generating organelle
RE McConnell, JN Higginbotham, DA Shifrin Jr, DL Tabb, RJ Coffey, ...
Journal of Cell Biology 185 (7), 1285-1298, 2009
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