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Rachel Schwartz
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DeNovoGear: de novo indel and point mutation discovery and phasing
A Ramu, MJ Noordam, RS Schwartz, A Wuster, ME Hurles, RA Cartwright, ...
Nature methods 10 (10), 985-987, 2013
2032013
Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species …
EM O'Neill, R Schwartz, CT Bullock, JS Williams, HB Shaffer, ...
Molecular ecology 22 (1), 111-129, 2013
1422013
Phylogenomic reconstruction supports supercontinent origins for Leishmania
KM Harkins, RS Schwartz, RA Cartwright, AC Stone
Infection, Genetics and Evolution 38, 101-109, 2016
752016
Branch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworks
RS Schwartz, RL Mueller
BMC Evolutionary Biology 10, 1-21, 2010
622010
Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia
DJ Winter, MA Pacheco, AF Vallejo, RS Schwartz, M Arevalo-Herrera, ...
PLoS neglected tropical diseases 9 (12), e0004252, 2015
582015
A composite genome approach to identify phylogenetically informative data from next-generation sequencing
RS Schwartz, KM Harkins, AC Stone, RA Cartwright
BMC bioinformatics 16, 1-10, 2015
322015
The importance of selection in the evolution of blindness in cavefish
RA Cartwright, RS Schwartz, AL Merry, MM Howell
BMC Evolutionary Biology 17, 1-14, 2017
302017
The why, when, and how of computing in biology classrooms
AM Wright, RS Schwartz, JR Oaks, CE Newman, SP Flanagan
F1000Research 8, 2019
212019
Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions
SH Wu, RS Schwartz, DJ Winter, DF Conrad, RA Cartwright
Bioinformatics 33 (15), 2322-2329, 2017
212017
Extensive genome-wide duplications in the eastern oyster (Crassostrea virginica)
TH Modak, R Literman, JB Puritz, KM Johnson, EM Roberts, D Proestou, ...
Philosophical Transactions of the Royal Society B 376 (1825), 20200164, 2021
202021
Genome-scale profiling reveals noncoding loci carry higher proportions of concordant data
R Literman, R Schwartz
Molecular Biology and Evolution, 2021
162021
Characterization of microsatellite loci in Sacramento perch (Archoplites interruptus)
RS Schwartz, B May
Molecular Ecology Notes 4 (4), 694-697, 2004
142004
Variation in DNA substitution rates among lineages erroneously inferred from simulated clock-like data
RS Schwartz, RL Mueller
PLoS One 5 (3), e9649, 2010
92010
Genetic evaluation of isolated populations for use in reintroductions reveals significant genetic bottlenecks in potential stocks of Sacramento perch
RS Schwartz, B May
Transactions of the American Fisheries Society 137 (6), 1764-1777, 2008
82008
Limited effects of among-lineage rate variation on the phylogenetic performance of molecular markers
RS Schwartz, RL Mueller
Molecular Phylogenetics and Evolution 54 (3), 849-856, 2010
62010
Metamorphosis imposes variable constraints on genome expansion through effects on development
RL Mueller, CE Cressler, RS Schwartz, RA Chong, MA Butler
Integrative Organismal Biology 5 (1), obad015, 2023
32023
Reference‐free discovery of nuclear SNPs permits accurate, sensitive identification of Carya (hickory) species and hybrids
RA Literman, BM Ott, J Wen, LJ Grauke, RS Schwartz, SM Handy
Applications in Plant Sciences 10 (1), e11455, 2022
32022
Efficient distance calculations between genomes using mathematical approximation
Y Hrytsenko, NM Daniels, RS Schwartz
Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018
32018
Interrogating Genomic Data in the Phylogenetic Placement of Treeshrews Reveals Potential Sources of Conflict
A Knyshov, Y Hrytsenko, R Literman, RS Schwartz
bioRxiv, 2021.11. 18.469131, 2021
22021
Contrasting consequences of historical climate change for marmots at northern and temperate latitudes
AM Rankin, RS Schwartz, CH Floyd, KE Galbreath
Journal of mammalogy 100 (2), 328-344, 2019
22019
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Articles 1–20