Pratik Jagtap
Pratik Jagtap
Research Assistant Professor, University of Minnesota
Verified email at - Homepage
Cited by
Cited by
A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective
S Rendulic, P Jagtap, A Rosinus, M Eppinger, C Baar, C Lanz, H Keller, ...
Science 303 (5658), 689-692, 2004
Complete genome sequence and analysis of Wolinella succinogenes
C Baar, M Eppinger, G Raddatz, J Simon, C Lanz, O Klimmek, ...
Proceedings of the National Academy of Sciences 100 (20), 11690-11695, 2003
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
A two‐step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies
P Jagtap, J Goslinga, JA Kooren, T McGowan, MS Wroblewski, ...
Proteomics 13 (8), 1352-1357, 2013
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
Multi-omic data analysis using Galaxy
J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ...
Nature biotechnology 33 (2), 137-139, 2015
Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators …
VG Keshamouni, P Jagtap, G Michailidis, JR Strahler, R Kuick, AK Reka, ...
Journal of proteome research 8 (1), 35-47, 2009
Deep metaproteomic analysis of human salivary supernatant
P Jagtap, T McGowan, S Bandhakavi, ZJ Tu, S Seymour, TJ Griffin, ...
Proteomics 12 (7), 992-1001, 2012
Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations
GM Sheynkman, JE Johnson, PD Jagtap, MR Shortreed, G Onsongo, ...
BMC genomics 15, 1-9, 2014
Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework
PD Jagtap, JE Johnson, G Onsongo, FW Sadler, K Murray, Y Wang, ...
Journal of proteome research 13 (12), 5898-5908, 2014
Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides
DW Mahoney, TM Therneau, CJ Heppelmann, LA Higgins, LM Benson, ...
Journal of proteome research 10 (9), 4325-4333, 2011
Metaproteomic analysis using the Galaxy framework
PD Jagtap, A Blakely, K Murray, S Stewart, J Kooren, JE Johnson, ...
Proteomics 15 (20), 3553-3565, 2015
Adaptation to low temperature and regulation of gene expression in Antarctic psychrotrophic bacteria
MK Ray, GS Kumar, K Janiyani, K Kannan, P Jagtap, MK Basu, S Shivaji
Journal of biosciences 23, 423-435, 1998
Progress and challenges in ocean metaproteomics and proposed best practices for data sharing
MA Saito, EM Bertrand, ME Duffy, DA Gaylord, NA Held, WJ Hervey IV, ...
Journal of proteome research 18 (4), 1461-1476, 2019
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
T Van Den Bossche, BJ Kunath, K Schallert, SS Schäpe, PE Abraham, ...
Nature communications 12 (1), 7305, 2021
Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries
JD Rudney, PD Jagtap, CS Reilly, R Chen, TW Markowski, LA Higgins, ...
Microbiome 3, 1-17, 2015
Proteomic Profiles in Acute Respiratory Distress Syndrome Differentiates Survivors from Non-Survivors.
WCH Bhargava M, Becker TL, Viken KJ, Jagtap PD, Dey S, Steinbach MS, Wu B ...
PLoS One 9 (10), doi: 10.1371/journal.pone.0109713, 2014
Early events of Bacillus anthracis germination identified by time‐course quantitative proteomics
P Jagtap, G Michailidis, R Zielke, AK Walker, N Patel, JR Strahler, A Driks, ...
Proteomics 6 (19), 5199-5211, 2006
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes
T Van Den Bossche, MØ Arntzen, D Becher, D Benndorf, VGH Eijsink, ...
Microbiome 9 (1), 243, 2021
Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework
C Blank, C Easterly, B Gruening, J Johnson, CA Kolmeder, P Kumar, ...
Proteomes 6 (1), 7, 2018
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