Thomas King-Fung Wong
Thomas King-Fung Wong
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ModelFinder: fast model selection for accurate phylogenetic estimates
S Kalyaanamoorthy, BQ Minh, TKF Wong, A Von Haeseler, LS Jermiin
Nature methods 14 (6), 587-589, 2017
Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
Science 346 (6210), 763-767, 2014
SOAP3: Ultra-fast GPU-based parallel alignment tool for short reads
CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ...
Bioinformatics, 2012
SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner
R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ...
PloS one 8 (5), e65632, 2013
Mixture models of nucleotide sequence evolution that account for heterogeneity in the substitution process across sites and across lineages
V Jayaswal, TKF Wong, J Robinson, L Poladian, LS Jermiin
Systematic Biology 63 (5), 726-742, 2014
Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil
WT Tay, TK Walsh, S Downes, C Anderson, LS Jermiin, TKF Wong, ...
Scientific Reports 7 (1), 1-10, 2017
Structural alignment of RNA with complex pseudoknot structure
TKF Wong, TW Lam, WK Sung, BWY Cheung, SM Yiu
Journal of Computational Biology 18 (1), 97-108, 2011
SOAP3: GPU-based Compressed Indexing and Ultra-fast Parallel Alignment of Short Reads
CM Liu, TW Lam, KF Wong, EMK Wu, SM Yiu, Z Li, R Luo, B Wang, C Yu, ...
Third Workshop on Massive Data Algorithmics (MASSIVE 2011), 2011
Promoter-sharing by different genes in human genome–CPNE1 and RBM12 gene pair as an example
W Yang, P Ng, M Zhao, TKF Wong, SM Yiu, YL Lau
BMC genomics 9 (1), 1-16, 2008
A minimum reporting standard for multiple sequence alignments
TKF Wong, S Kalyaanamoorthy, K Meusemann, DK Yeates, B Misof, ...
NAR genomics and bioinformatics 2 (2), lqaa024, 2020
Complete mitochondrial genome of the green-lipped mussel, Perna canaliculus (Mollusca: Mytiloidea), from long nanopore sequencing reads
L Ranjard, TKF Wong, C Külheim, AG Rodrigo, NLC Ragg, S Patel, ...
Mitochondrial DNA Part B 3 (1), 175-176, 2018
Memory efficient algorithms for structural alignment of RNAs with pseudoknots
TKF Wong, YS Chiu, TW Lam, SM Yiu
IEEE/ACM transactions on computational biology and bioinformatics 9 (1), 161-168, 2011
RNASAlign: RNA structural alignment system
TKF Wong, KL Wan, BY Hsu, BWY Cheung, WK Hon, TW Lam, SM Yiu
Bioinformatics 27 (15), 2151-2152, 2011
Structural alignment of RNA with triple helix structure
TKF Wong, SM Yiu
Journal of Computational Biology 19 (4), 365-378, 2012
Adjacent nucleotide dependence in ncRNA and order-1 SCFG for ncRNA identification
TKF Wong, TW Lam, WK Sung, SM Yiu
PLoS One 5 (9), e12848, 2010
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data
X Hu, TKF Wong, ZJ Lu, TF Chan, TCK Lau, SM Yiu, KY Yip
Bioinformatics 30 (8), 1049-1055, 2014
Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation …
L Ranjard, TKF Wong, AG Rodrigo
PloS one 13 (4), e0195090, 2018
Correcting short reads with high error rates for improved sequencing result
TKF Wong, TW Lam, PY Chan, SM Yiu
International journal of bioinformatics research and applications 5 (2), 224-237, 2009
Finding alternative splicing patterns with strong support from expressed sequences on individual exons/introns
TKF Wong, TW Lam, W Yang, SM Yiu
Journal of Bioinformatics and Computational Biology 6 (05), 1021-1033, 2008
A memory efficient algorithm for structural alignment of RNAs with embedded simple pseudoknots
T Wong, YS Chiu, TW Lam, SM Yiu
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 89-99, 2008
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